منابع مشابه
Gff2ps: Visualizing Genomic Annotations
gff2psis a program for visualizing annotations of genomic sequences. The program takes the annotated features on a genomic sequence in GFF format as input, and produces a visual output in PostScript. While it can be used in a very simple way, it also allows for a great degree of customization through a number of options and/or customization files.
متن کاملVisualizing Gene Ontology annotations
Contemporary techniques in biology produce readouts for large numbers of genes simultaneously, the typical example being differential gene expression measurements. Moreover, those genes are often richly annotated using GO terms that describe gene function and that can be used to summarize the results of the genome-scale experiments. However, making sense of such GO enrichment analyses may be ch...
متن کاملVisualizing GO Annotations.
Contemporary techniques in biology produce readouts for large numbers of genes simultaneously, the typical example being differential gene expression measurements. Moreover, those genes are often richly annotated using GO terms that describe gene function and that can be used to summarize the results of the genome-scale experiments. However, making sense of such GO enrichment analyses may be ch...
متن کاملVisualizing NLP annotations for Crowdsourcing
Visualizing NLP annotation is useful for the collection of training data for the statistical NLP approaches. Existing toolkits either provide limited visual aid, or introduce comprehensive operators to realize sophisticated linguistic rules. Workers must be well trained to use them. Their audience thus can hardly be scaled to large amounts of non-expert crowdsourced workers. In this paper, we p...
متن کاملannotatr: Associating genomic regions with genomic annotations
Motivation: Analysis of next-generation sequencing data often results in a list of genomic regions. These may include differentially methylated CpGs/regions, transcription factor binding sites, interacting chromatin regions, or GWAS-associated SNPs, among others. A common analysis step is to annotate such genomic regions to genomic annotations (promoters, exons, enhancers, etc.). Existing tools...
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ژورنال
عنوان ژورنال: Bioinformatics
سال: 2000
ISSN: 1367-4803,1460-2059
DOI: 10.1093/bioinformatics/16.8.743